Nikolina (NS) Sostaric PhD
Training
Biochemistry / Bioinformatics
Research interests
Post-transcriptional regulation of T-cells; RNA binding proteins
Technology
- Omics data analysis, machine learning (R, Python)
- Structural bioinformatics - docking, molecular dynamics simulations
Resume
| September 2021 - present | Bioinformatician, Sanquin Research, Amsterdam |
| 2017-2021 | PhD in Bioscience Engineering (Bioinformatics), KU Leuven, Belgium |
| 2015-2016 | PhD program in Biomedical Sciences, KU Leuven, Belgium |
| 2013 - 2015 | MSc in Chemistry (Biochemistry and Physical Chemistry), University of Zagreb, Croatia |
| 2010 - 2013 | BSc in Chemistry, University of Zagreb, Croatia |
Publications
Nikolina Šoštarić, Ahmed Arslan, Bernardo Carvalho, Marcin Plech, Karin Voordeckers, Kevin J. Verstrepen, Vera van Noort, Integrated multi-omics analysis of mechanisms underlying yeast ethanol tolerance. J Proteome Res. 20(8) (2021):3840-3852.
Nikolina Šoštarić and Vera van Noort, Molecular dynamics shows complex interplay and long range effects of post-translational modifications in yeast protein interactions. PLoS Comput. Biol. 17(5) (2021): e1008988.
Rashmi R. Hazarika, Nikolina Sostaric, Yifeng Sun, Vera van Noort, Large-scale docking predicts that sORF-encoded peptides may function through protein-peptide interactions in Arabidopsis thaliana. PLoS One 13(10) (2018):e0205179.
Nikolina Šoštarić, Francis J. O’Reilly, Piero Giansanti, Albert J.R. Heck, Anne-Claude Gavin, Vera van Noort, Effects of acetylation and phosphorylation on subunit interactions in three large eukaryotic complexes. Molecular and Cellular Proteomics 17(12) (2018), 2387-2401.
Katerina E. Chatzi, Marios Frantzeskos Sardis, Alexandra Tsirigotaki, Marina Koukaki, Nikolina Šoštarić, Albert Konijnenberg, Frank Sobott, Charalampos G. Kalodimos, Spyridoula Karamanou, Anastassios Economou, Preprotein mature domains contain translocase targeting signals that are essential for secretion. The Journal of Cell Biology 216(5) (2017), 1357-1369.
Alexandra Tsirigotaki, Jozefien De Geyter, Nikolina Šoštarić, Anastassios Economou, Spyridoula Karamanou, Protein export through the bacterial Sec pathway. Nature Reviews Microbiology 15 (2017), 21-36.
Nevena Cvetesic, Morana Dulic, Mirna Bilus, Nikolina Sostaric, Boris Lenhard, Ita Gruic-Sovulj, Naturally Occurring Isoleucyl-tRNA Synthetase without tRNA-Dependent Pre-Transfer Editing. The Journal of Biological Chemistry 291(16) (2016), 8618-8631.
